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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
107
ChIP-seq
30
ATAC-seq
4
Hi-C
2
pCHi-C
1
DNase-seq
Assay category
120
Transcription
107
DNA binding
31
DNA accessibility
4
3D chromatin structure
Target of assay
65
histone
65
histone modification
37
transcription factor
33
narrow histone mark
31
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
49
August, 2017
38
December, 2017
August, 2021
31
February, 2018
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
235
bam
233
bigWig
120
tsv
118
fastq
107
bed narrowPeak
23
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
5
tagAlign
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
264
Homo sapiens
Biosample type
1754
tissue
625
primary cell
507
cell line
264
in vitro differentiated cells
3
stem cell
Organ
69
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
264
AMP
Genome assembly (visualization)
264
hg19
235
GRCh38
4
hg18
Lab
256
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
August, 2021
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
7
1
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
hepatocyte
14
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