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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
127
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
129
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
83
histone
83
histone modification
46
transcription factor
42
broad histone mark
40
narrow histone mark
26
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
68
August, 2017
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
230
bam
217
bigWig
122
fastq
122
tsv
89
bed narrowPeak
23
bed bed3+
17
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
328
Homo sapiens
Biosample type
2493
tissue
682
primary cell
541
cell line
328
in vitro differentiated cells
10
stem cell
Organ
93
connective tissue
29
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
328
AMP
Genome assembly (visualization)
244
hg19
215
GRCh38
4
hg18
Lab
278
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
month_released!
August, 2021
organ_slims!
epithelium
BIOSAMPLE
ASSAY
328 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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