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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
81
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
127
Transcription
81
DNA binding
13
DNA accessibility
Target of assay
55
histone
55
histone modification
28
narrow histone mark
26
broad histone mark
26
transcription factor
4
RNA binding protein
2
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
December, 2017
31
February, 2018
22
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
248
bam
225
bigWig
131
tsv
98
bed narrowPeak
98
fastq
40
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
225
Homo sapiens
Biosample type
1696
tissue
613
primary cell
522
cell line
225
in vitro differentiated cells
1
stem cell
Organ
57
connective tissue
13
embryo
4
epithelium
2
pancreas
1
heart
Project
225
AMP
Genome assembly (visualization)
220
hg19
209
GRCh38
4
hg18
Lab
215
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
91
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
225 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
3
1
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
6
1
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