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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
104
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
112
Transcription
104
DNA binding
18
DNA accessibility
Target of assay
62
histone
62
histone modification
37
transcription factor
32
narrow histone mark
29
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
49
August, 2017
38
December, 2017
February, 2018
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
234
bam
212
bigWig
112
bed narrowPeak
112
tsv
87
fastq
19
bed bed3+
18
tagAlign
15
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
234
Homo sapiens
Biosample type
1819
tissue
536
primary cell
464
cell line
234
in vitro differentiated cells
3
stem cell
Organ
54
connective tissue
20
epithelium
14
liver
11
embryo
2
pancreas
1
heart
Project
234
AMP
Genome assembly (visualization)
266
hg19
234
GRCh38
4
hg18
Lab
234
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
234 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
14
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