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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
116
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
137
DNA binding
118
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
76
histone
76
histone modification
38
broad histone mark
37
narrow histone mark
37
transcription factor
24
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
252
bam
223
bigWig
116
bed narrowPeak
116
tsv
102
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
308
Homo sapiens
Biosample type
2685
tissue
849
primary cell
657
cell line
308
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
308
AMP
Genome assembly (visualization)
261
hg19
234
GRCh38
4
hg18
Lab
301
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
February, 2018
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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