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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
105
total RNA-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
115
DNA binding
105
Transcription
13
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
34
December, 2017
31
February, 2018
22
August, 2021
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
269
bam
237
bigWig
141
fastq
132
bed narrowPeak
109
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
237
Homo sapiens
Biosample type
1288
tissue
611
primary cell
439
cell line
237
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
237
AMP
Genome assembly (visualization)
232
hg19
221
GRCh38
4
hg18
Lab
227
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
75
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2021
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
47
3
1
neural progenitor cell
13
7
pancreatic endoderm
12
4
1
hepatocyte
14
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