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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
198
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
273
bam
242
bigWig
136
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
347
Homo sapiens
Biosample type
2267
tissue
800
primary cell
631
cell line
347
in vitro differentiated cells
9
stem cell
Organ
79
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
347
AMP
Genome assembly (visualization)
254
hg19
247
GRCh38
Lab
303
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
January, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
347 results
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ChIP-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
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