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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
57
ChIP-seq
30
ATAC-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
116
Transcription
57
DNA binding
30
DNA accessibility
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
18
broad histone mark
16
transcription factor
15
narrow histone mark
8
control
5
RNA binding protein
Date released
132
May, 2021
August, 2021
26
February, 2021
16
February, 2023
14
August, 2017
8
March, 2020
8
October, 2019
5
November, 2019
2
December, 2019
Available data
254
bam
233
bigWig
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
211
Homo sapiens
Biosample type
2169
tissue
675
primary cell
211
in vitro differentiated cells
190
cell line
6
stem cell
Organ
38
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
211
AMP
Genome assembly (visualization)
146
hg19
117
GRCh38
Lab
161
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
month_released!
January, 2018
August, 2021
files.file_type!
fastq
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
6
1
adipocyte
5
14
7
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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