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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
253
bigWig
137
fastq
131
tsv
130
bed narrowPeak
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
387
Homo sapiens
Biosample type
2230
tissue
742
primary cell
569
cell line
387
in vitro differentiated cells
9
stem cell
Organ
97
connective tissue
28
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
387
AMP
Genome assembly (visualization)
295
hg19
263
GRCh38
Lab
333
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
January, 2018
organ_slims!
pancreas
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
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