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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
161
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
60
August, 2017
47
May, 2021
35
December, 2017
28
August, 2021
16
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
January, 2018
4
March, 2020
1
August, 2018
Available data
261
bam
255
bigWig
132
bed narrowPeak
tsv
115
fastq
30
tagAlign
20
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
222
Homo sapiens
Biosample type
1512
tissue
786
primary cell
459
cell line
222
in vitro differentiated cells
4
stem cell
Organ
84
connective tissue
18
epithelium
15
embryo
14
liver
2
pancreas
1
adipose tissue
Project
222
AMP
Genome assembly (visualization)
165
hg19
133
GRCh38
Lab
173
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
23
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
January, 2018
target.investigated_as!
control
files.file_type!
tsv
BIOSAMPLE
ASSAY
222 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
59
8
1
1
1
embryonic stem cell
34
6
5
neural progenitor cell
14
10
hepatocyte
14
pancreatic endoderm
13
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