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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
Assay category
198
DNA binding
136
Transcription
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
October, 2019
2
December, 2019
1
August, 2018
Available data
271
bam
244
bigWig
140
fastq
129
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
5
bedpe bed3+
2
hic
2
ibed
Organism
347
Homo sapiens
Biosample type
2045
tissue
773
primary cell
603
cell line
347
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
347
AMP
Genome assembly (visualization)
250
hg19
245
GRCh38
4
hg18
Lab
303
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
347 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
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