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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1149
total RNA-seq
870
ChIP-seq
282
ATAC-seq
176
single cell RNA-seq
175
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
26
pCHi-C
17
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1341
Transcription
870
DNA binding
489
DNA accessibility
38
DNA methylation
17
3D chromatin structure
Target of assay
537
histone modification
536
histone
300
broad histone mark
235
narrow histone mark
197
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
271
August, 2021
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2008
bam
1827
bigWig
1197
tsv
923
bed narrowPeak
529
bigBed narrowPeak
518
fastq
229
tagAlign
226
bed bed3+
210
bed broadPeak
173
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
14
bedpe bed3+
12
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
2872
Homo sapiens
Biosample type
2495
tissue
1054
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
640
connective tissue
505
pancreas
488
adipose tissue
370
liver
295
kidney
266
heart
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
39
epithelium
35
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2784
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1919
GRCh38
1881
hg19
4
hg18
Lab
2515
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
198
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
2881 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
284
50
55
1
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
+ See 111 more…
in vitro differentiated cells
adipocyte
5
67
6
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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