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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
DNase-seq
47
ChIP-seq
4
ATAC-seq
2
Capture-C
1
snATAC-seq
Assay category
177
DNA accessibility
47
DNA binding
Target of assay
20
histone
20
histone modification
19
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
2
RNA binding protein
Date released
163
June, 2019
33
August, 2017
12
December, 2017
9
November, 2018
4
February, 2023
October, 2019
2
August, 2021
2
September, 2017
1
May, 2022
Available data
2008
bam
1867
bigWig
1197
tsv
963
bed narrowPeak
529
bigBed narrowPeak
518
fastq
229
tagAlign
226
bed bed3+
210
bed broadPeak
173
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
14
bedpe bed3+
12
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
Organism
226
Homo sapiens
Biosample type
201
tissue
35
primary cell
25
in vitro differentiated cells
3
stem cell
1
cell line
Organ
68
kidney
33
musculature of body
32
limb
27
brain
27
heart
27
pancreas
19
connective tissue
18
ureter
6
adipose tissue
6
liver
3
blood vessel
3
embryo
3
eye
3
vasculature
2
artery
1
spleen
Project
226
AMP
Genome assembly (visualization)
219
GRCh38
210
hg19
Lab
224
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
8
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
226 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 40 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
See all biosamples
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