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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
127
total RNA-seq
17
ATAC-seq
1
DNase-seq
Assay category
143
DNA binding
127
Transcription
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
36
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
82
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
37
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
288
bam
257
bigWig
141
fastq
131
tsv
130
bed narrowPeak
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
288
Homo sapiens
Biosample type
1478
tissue
519
cell line
415
primary cell
288
in vitro differentiated cells
3
stem cell
Organ
59
connective tissue
28
embryo
24
epithelium
15
liver
pancreas
1
heart
Project
288
AMP
Genome assembly (visualization)
263
GRCh38
262
hg19
Lab
288
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
288 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
3
59
adipocyte
53
4
1
neural progenitor cell
20
7
10
pancreatic endoderm
18
4
cardiac precursors (cardiac muscle cell)
19
1
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