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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
114
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
116
Transcription
39
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
129
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
266
bam
235
bigWig
141
fastq
130
bed narrowPeak
109
tsv
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
365
Homo sapiens
Biosample type
1687
tissue
700
primary cell
500
cell line
365
in vitro differentiated cells
10
stem cell
Organ
89
connective tissue
29
embryo
24
epithelium
15
liver
pancreas
1
adipose tissue
1
heart
Project
365
AMP
Genome assembly (visualization)
269
hg19
241
GRCh38
4
hg18
Lab
311
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
pancreas
month_released!
February, 2021
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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