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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
15
ATAC-seq
9
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
25
DNA binding
15
DNA accessibility
9
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
8
control
5
transcription factor
4
narrow histone mark
Date released
25
August, 2017
13
February, 2023
8
February, 2021
2
August, 2021
2
October, 2019
1
August, 2018
1
May, 2021
Available data
59
bam
57
bigWig
55
fastq
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
52
Homo sapiens
Biosample type
534
tissue
52
in vitro differentiated cells
22
primary cell
1
stem cell
Organ
52
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
52
AMP
Genome assembly (visualization)
28
hg19
11
GRCh38
Lab
50
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
5
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
25
7
5
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
cardiac fibroblast
1
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