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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
187
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
63
August, 2017
42
August, 2021
41
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
253
bigWig
135
fastq
131
tsv
126
bed narrowPeak
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
382
Homo sapiens
Biosample type
2501
tissue
1034
primary cell
542
cell line
382
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
29
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
382
AMP
Genome assembly (visualization)
290
hg19
258
GRCh38
4
hg18
Lab
333
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
382 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
63
5
8
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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