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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
136
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
187
DNA binding
138
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
64
August, 2017
41
December, 2017
39
February, 2018
38
August, 2021
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
248
bigWig
135
fastq
131
tsv
122
bed narrowPeak
40
tagAlign
23
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
376
Homo sapiens
Biosample type
2714
tissue
1078
primary cell
597
cell line
376
in vitro differentiated cells
10
stem cell
Organ
89
connective tissue
29
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
376
AMP
Genome assembly (visualization)
284
hg19
259
GRCh38
4
hg18
Lab
334
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
63
5
7
1
cardiomyocytes
3
59
embryonic stem cell
35
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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