Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
149
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
64
August, 2017
42
August, 2021
41
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
200
bam
164
bigWig
135
fastq
121
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
256
Homo sapiens
Biosample type
2674
tissue
872
primary cell
576
cell line
256
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
27
embryo
17
epithelium
13
liver
1
adipose tissue
Project
256
AMP
Genome assembly (visualization)
202
hg19
175
GRCh38
4
hg18
Lab
249
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
month_released!
May, 2021
BIOSAMPLE
ASSAY
256 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
63
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
13
+ See 18 more…
See all biosamples
Download