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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
83
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
83
DNA binding
18
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
broad histone mark
37
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
37
August, 2017
27
December, 2017
24
August, 2021
23
February, 2018
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
228
bam
206
bigWig
127
tsv
91
bed narrowPeak
87
fastq
15
bed bed3+
12
tagAlign
8
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
228
Homo sapiens
Biosample type
tissue
448
cell line
440
primary cell
228
in vitro differentiated cells
2
stem cell
Organ
42
connective tissue
17
embryo
13
epithelium
7
liver
2
pancreas
1
heart
Project
228
AMP
Genome assembly (visualization)
261
hg19
228
GRCh38
4
hg18
Lab
228
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
36
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
9
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