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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
53
ChIP-seq
42
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
53
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
122
May, 2021
35
August, 2021
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
6
August, 2017
5
November, 2019
2
December, 2019
Available data
254
bam
222
bigWig
131
tsv
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
228
Homo sapiens
Biosample type
2142
tissue
590
primary cell
228
in vitro differentiated cells
224
cell line
6
stem cell
Organ
34
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
228
AMP
Genome assembly (visualization)
174
hg19
141
GRCh38
Lab
184
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
target.investigated_as!
broad histone mark
files.file_type!
fastq
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
27
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
5
6
8
1
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