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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
109
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
109
DNA binding
18
DNA accessibility
Target of assay
79
histone
79
histone modification
41
narrow histone mark
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
42
August, 2017
32
December, 2017
31
August, 2021
31
February, 2018
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
254
Homo sapiens
Biosample type
1685
tissue
564
cell line
509
primary cell
254
in vitro differentiated cells
2
stem cell
Organ
47
connective tissue
24
embryo
17
epithelium
8
liver
3
pancreas
1
heart
Project
254
AMP
Genome assembly (visualization)
228
GRCh38
228
hg19
Lab
254
AMP-T2D consortium
Audit category:
101
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
41
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
14
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