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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
78
ChIP-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
127
Transcription
78
DNA binding
13
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
broad histone mark
37
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
36
August, 2017
23
December, 2017
23
February, 2018
22
February, 2021
16
August, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
254
bam
222
bigWig
131
tsv
110
fastq
95
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
222
Homo sapiens
Biosample type
1499
tissue
504
cell line
495
primary cell
222
in vitro differentiated cells
2
stem cell
Organ
45
connective tissue
17
embryo
13
epithelium
7
liver
2
pancreas
1
heart
Project
222
AMP
Genome assembly (visualization)
218
hg19
206
GRCh38
4
hg18
Lab
212
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
222 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
35
3
1
cardiac precursors (cardiac muscle cell)
19
neural progenitor cell
7
7
pancreatic endoderm
4
8
1
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