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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
110
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
110
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
broad histone mark
42
narrow histone mark
38
transcription factor
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
122
May, 2021
48
August, 2017
35
August, 2021
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
222
bam
199
bigWig
131
tsv
78
fastq
72
bed narrowPeak
26
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
306
Homo sapiens
Biosample type
2429
tissue
966
primary cell
643
cell line
306
in vitro differentiated cells
7
stem cell
Organ
77
connective tissue
13
embryo
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
306
AMP
Genome assembly (visualization)
234
hg19
201
GRCh38
4
hg18
Lab
262
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
broad histone mark
month_released!
December, 2017
BIOSAMPLE
ASSAY
306 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
5
47
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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