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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
109
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
48
August, 2017
35
August, 2021
32
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
169
bam
133
bigWig
110
fastq
90
bed narrowPeak
52
tsv
21
bed bed3+
20
tagAlign
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
216
Homo sapiens
Biosample type
2434
tissue
826
primary cell
622
cell line
216
in vitro differentiated cells
9
stem cell
Organ
76
connective tissue
23
embryo
12
epithelium
8
liver
1
adipose tissue
Project
216
AMP
Genome assembly (visualization)
172
hg19
144
GRCh38
4
hg18
Lab
209
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
broad histone mark
month_released!
May, 2021
BIOSAMPLE
ASSAY
216 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
47
5
8
1
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
14
4
1
cardiomyocytes (cardiac muscle cell)
2
1
2
2
2
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