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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
95
ChIP-seq
25
ATAC-seq
4
GRO-seq
4
Hi-C
4
pCHi-C
2
single cell RNA-seq
Assay category
129
Transcription
95
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
121
May, 2021
32
December, 2017
31
August, 2021
31
February, 2018
18
February, 2021
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
3
February, 2023
2
December, 2019
Available data
207
bam
177
bigWig
126
tsv
67
fastq
62
bed narrowPeak
20
tagAlign
8
bed bed3+
7
bigBed narrowPeak
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
261
Homo sapiens
Biosample type
1927
tissue
931
primary cell
643
cell line
261
in vitro differentiated cells
8
stem cell
Organ
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
261
AMP
Genome assembly (visualization)
200
hg19
186
GRCh38
4
hg18
Lab
221
AMP-T2D consortium
37
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
broad histone mark
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
261 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
29
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
14
1
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