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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
18
DNA binding
6
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
12
December, 2017
10
February, 2018
2
May, 2021
1
January, 2018
Available data
24
bam
23
fastq
17
bigWig
10
bed narrowPeak
6
tsv
2
bed bed3+
Organism
25
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
Organ
77
connective tissue
25
embryo
17
epithelium
8
liver
3
pancreas
1
adipose tissue
1
heart
Project
25
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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