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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
60
August, 2017
42
May, 2021
35
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
134
bam
132
bed narrowPeak
132
bigWig
104
fastq
30
tagAlign
20
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
221
Homo sapiens
Biosample type
1513
tissue
806
primary cell
466
cell line
221
in vitro differentiated cells
9
stem cell
Organ
80
connective tissue
18
epithelium
16
embryo
14
liver
2
pancreas
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
165
hg19
133
GRCh38
4
hg18
Lab
177
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
control
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
59
8
1
1
embryonic stem cell
34
6
1
neural progenitor cell
14
10
hepatocyte
14
pancreatic endoderm
13
1
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