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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
102
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
102
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
August, 2017
35
August, 2021
35
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
213
bam
211
bigWig
131
tsv
89
bed narrowPeak
71
fastq
18
tagAlign
16
bigBed narrowPeak
14
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
Organism
297
Homo sapiens
Biosample type
2295
tissue
1007
primary cell
579
cell line
297
in vitro differentiated cells
9
stem cell
Organ
29
connective tissue
22
embryo
20
epithelium
14
liver
2
pancreas
1
adipose tissue
1
heart
Project
297
AMP
Genome assembly (visualization)
244
hg19
212
GRCh38
4
hg18
Lab
248
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
control
month_released!
August, 2017
BIOSAMPLE
ASSAY
297 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
34
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
1
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