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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
112
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
112
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
110
May, 2021
38
August, 2017
35
August, 2021
31
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
224
bam
222
bigWig
131
tsv
100
bed narrowPeak
86
fastq
26
tagAlign
15
bigBed narrowPeak
14
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
308
Homo sapiens
Biosample type
2461
tissue
1043
primary cell
308
in vitro differentiated cells
218
cell line
9
stem cell
Organ
67
connective tissue
19
embryo
17
epithelium
12
liver
1
adipose tissue
1
heart
1
pancreas
Project
308
AMP
Genome assembly (visualization)
255
hg19
223
GRCh38
4
hg18
Lab
271
AMP-T2D consortium
30
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
control
transcription factor
BIOSAMPLE
ASSAY
308 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
5
37
8
1
1
embryonic stem cell
7
22
6
1
neural progenitor cell
7
14
10
cardiac precursors (cardiac muscle cell)
19
1
1
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