Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
76
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
76
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
105
histone
histone modification
53
narrow histone mark
51
broad histone mark
39
transcription factor
37
control
11
RNA binding protein
1
chromatin remodeller
Date released
111
May, 2021
28
August, 2021
26
February, 2021
25
August, 2017
23
February, 2018
16
February, 2023
15
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
202
bam
171
bigWig
131
tsv
66
fastq
44
bed narrowPeak
14
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
272
Homo sapiens
Biosample type
2144
tissue
851
primary cell
609
cell line
272
in vitro differentiated cells
8
stem cell
Organ
54
connective tissue
16
embryo
9
epithelium
3
liver
2
pancreas
1
adipose tissue
1
heart
Project
272
AMP
Genome assembly (visualization)
210
hg19
177
GRCh38
4
hg18
Lab
238
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
113
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
inconsistent control read length
target.investigated_as!
histone modification
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
272 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
24
8
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download