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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
122
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
46
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
173
bam
137
bigWig
108
fastq
99
bed narrowPeak
52
tsv
34
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
229
Homo sapiens
Biosample type
2608
tissue
872
primary cell
280
cell line
229
in vitro differentiated cells
10
stem cell
Organ
74
connective tissue
24
embryo
17
epithelium
13
liver
1
adipose tissue
Project
229
AMP
Genome assembly (visualization)
175
hg19
148
GRCh38
4
hg18
Lab
222
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
transcription factor
month_released!
May, 2021
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
45
5
8
1
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
15
4
1
hepatocyte
13
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