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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
Assay category
170
DNA binding
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
72
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
63
May, 2021
38
August, 2017
15
September, 2018
13
December, 2017
11
June, 2019
9
August, 2021
9
October, 2019
8
February, 2018
3
November, 2017
1
May, 2019
Available data
152
bigWig
144
bam
144
bed narrowPeak
73
fastq
59
tagAlign
31
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
Organism
170
Homo sapiens
Biosample type
309
tissue
115
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
43
epithelium
32
pancreas
20
connective tissue
8
embryo
8
vasculature
7
blood vessel
7
liver
6
vein
5
kidney
4
musculature of body
3
brain
2
heart
1
eye
Project
130
AMP
40
T1D
Genome assembly (visualization)
152
hg19
142
GRCh38
Lab
110
AMP-T2D consortium
60
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 17 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
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