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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
Assay category
138
Transcription
131
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
43
December, 2017
43
May, 2021
24
February, 2018
21
August, 2021
Available data
93
bam
68
bed narrowPeak
68
bigWig
67
fastq
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
Organism
131
Homo sapiens
Biosample type
691
tissue
484
cell line
226
primary cell
131
in vitro differentiated cells
3
stem cell
Organ
22
embryo
22
epithelium
15
liver
3
pancreas
Project
131
AMP
Genome assembly (visualization)
72
GRCh38
71
hg19
Lab
94
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
primitive gut cell
8
Posterior foregut
5
Hepatic endoderm
4
cardiomyocytes
3
endocrine cell
3
pancreatic PP cell
3
posterior foregut
3
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