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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
14
3D chromatin structure
Date released
4
July, 2019
3
March, 2020
3
October, 2019
3
October, 2022
1
March, 2023
Available data
10
hic
8
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
Organism
14
Homo sapiens
Biosample type
16
tissue
10
primary cell
4
cell line
4
in vitro differentiated cells
Organ
7
epithelium
4
blood vessel
4
vasculature
3
brain
3
pancreas
2
vein
1
connective tissue
1
liver
Project
10
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
4
inconsistent ontology term
BIOSAMPLE
ASSAY
14 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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