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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
3
ATAC-seq
3
pCHi-C
2
ChIP-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
4
3D chromatin structure
4
Transcription
3
DNA accessibility
2
DNA binding
Target of assay
2
control
Date released
5
February, 2023
5
March, 2020
2
December, 2017
2
December, 2019
2
October, 2019
Available data
6
bedpe bed3+
4
hic
3
tsv
2
bam
2
bed bed3+
2
fastq
2
ibed
1
bed bedgraph
1
bed narrowPeak
1
bigWig
1
txt
Organism
16
Homo sapiens
Biosample type
87
tissue
35
cell line
18
primary cell
16
in vitro differentiated cells
1
stem cell
Organ
4
connective tissue
2
embryo
2
epithelium
Project
16
AMP
Genome assembly (visualization)
108
hg19
GRCh38
Lab
15
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
16
inconsistent ontology term
2
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
16 results
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Hi-C
ATAC-seq
pCHi-C
ChIP-seq
single cell RNA-seq
total RNA-seq
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
2
2
immature adipocyte
2
2
Hepatic endoderm
2
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
neuron cell of Hypothalamus (neuron)
1
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