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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
total RNA-seq
10
ATAC-seq
5
ChIP-seq
4
Hi-C
2
pCHi-C
Assay category
87
Transcription
10
DNA accessibility
5
DNA binding
4
3D chromatin structure
Target of assay
3
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
68
May, 2021
18
February, 2021
6
March, 2020
6
October, 2019
5
November, 2019
3
February, 2023
2
December, 2017
Available data
99
bam
93
bigWig
87
tsv
13
bed narrowPeak
6
bedpe bed3+
4
hic
3
tagAlign
2
bed bed3+
2
fastq
2
ibed
1
bed bedgraph
1
txt
Organism
108
Homo sapiens
Biosample type
108
in vitro differentiated cells
60
cell line
42
primary cell
4
tissue
Organ
4
embryo
3
epithelium
2
connective tissue
Project
108
AMP
Genome assembly (visualization)
108
hg19
99
GRCh38
Lab
107
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
lymphocyte of B lineage (iPSC)
1
1
1
Hepatic endoderm
2
immature adipocyte
2
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
neuron cell of Hypothalamus (neuron)
1
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