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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
2
ATAC-seq
2
Capture-C
Assay category
19
DNA binding
2
DNA accessibility
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
12
December, 2017
7
August, 2017
2
August, 2021
2
February, 2023
Available data
190
bam
166
bigWig
137
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
204
tissue
34
primary cell
23
in vitro differentiated cells
3
cell line
3
stem cell
Organ
11
connective tissue
3
embryo
Project
23
AMP
Genome assembly (visualization)
23
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
Audit category:
8
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
osteoblast
1
preadipocyte
1
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