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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
526
ChIP-seq
231
total RNA-seq
55
ATAC-seq
7
Hi-C
3
DNase-seq
3
pCHi-C
2
Capture-C
Assay category
526
DNA binding
231
Transcription
58
DNA accessibility
7
3D chromatin structure
Target of assay
389
transcription factor
114
histone
114
histone modification
85
recombinant protein
68
RNA binding protein
59
narrow histone mark
54
broad histone mark
33
chromatin remodeller
18
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
119
February, 2021
94
May, 2021
56
August, 2021
54
November, 2018
49
August, 2017
38
December, 2017
31
February, 2018
28
October, 2019
27
December, 2018
20
January, 2019
19
November, 2019
13
March, 2020
12
February, 2023
1
January, 2018
Available data
773
bam
771
bigWig
531
bed narrowPeak
485
fastq
368
bigBed narrowPeak
232
tsv
60
bed broadPeak
60
bigBed broadPeak
34
tagAlign
28
bed bed3+
8
bedpe bed3+
7
bed bedgraph
6
bed bed3
6
hic
3
tar
3
txt
2
ibed
1
hdf5
Organism
827
Homo sapiens
Biosample type
1755
tissue
628
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
344
liver
73
connective tissue
72
epithelium
65
heart
64
artery
64
blood vessel
64
vasculature
60
pancreas
55
blood
55
bodily fluid
29
embryo
12
kidney
Project
823
AMP
4
T1D
Genome assembly (visualization)
827
hg19
729
GRCh38
4
hg18
Lab
800
AMP-T2D consortium
15
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
168
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
17
missing controlled_by
Audit category:
43
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
827 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
Capture-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
48
4
8
1
1
cardiomyocytes
3
59
neural progenitor cell
12
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
13
4
hepatocyte
14
embryonic stem cell
2
2
6
definitive endodermal cell
7
2
induced pluripotent stem cell
9
primitive gut cell
7
2
cardiomyocytes (cardiac muscle cell)
3
1
2
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Posterior foregut
5
chondrocyte
5
endocrine cell
2
2
posterior foregut
2
2
lymphocyte of B lineage (iPSC)
1
1
1
Hepatic endoderm
2
immature adipocyte
2
osteoblast
1
1
pancreatic PP cell
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
neuron cell of Hypothalamus (neuron)
1
preadipocyte
1
smooth muscle cell
1
stem cell
1
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