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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
75
DNA binding
Target of assay
399
transcription factor
136
histone
136
histone modification
110
control
82
recombinant protein
75
RNA binding protein
69
broad histone mark
66
narrow histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
January, 2019
5
May, 2021
4
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
Available data
69
bam
69
fastq
68
bed narrowPeak
68
bigWig
63
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
75
Homo sapiens
Biosample type
64
cell line
28
tissue
11
in vitro differentiated cells
7
primary cell
Organ
56
liver
10
blood
10
bodily fluid
4
connective tissue
2
epithelium
Project
75
AMP
Genome assembly (visualization)
67
hg19
63
GRCh38
Lab
69
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
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