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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
39
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
153
May, 2021
86
August, 2021
68
August, 2017
61
November, 2018
56
February, 2021
43
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
22
February, 2023
21
November, 2019
19
March, 2020
6
November, 2020
5
January, 2018
2
December, 2019
2
March, 2023
1
August, 2018
1
May, 2020
1
October, 2022
Available data
45
bam
44
bigWig
39
bed narrowPeak
24
tsv
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
86
Homo sapiens
Biosample type
227
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
31
liver
8
embryo
4
connective tissue
2
epithelium
2
kidney
2
pancreas
Project
86
AMP
Genome assembly (visualization)
56
hg19
38
GRCh38
Lab
48
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
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