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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
Assay category
75
DNA binding
Target of assay
410
transcription factor
150
histone
150
histone modification
120
control
89
recombinant protein
76
RNA binding protein
75
broad histone mark
74
narrow histone mark
33
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
20
August, 2017
11
December, 2017
10
May, 2021
8
August, 2021
8
February, 2018
8
November, 2017
6
November, 2019
4
October, 2019
Available data
55
bam
55
bigWig
54
bed narrowPeak
39
fastq
20
tagAlign
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
4
bed bed3+
Organism
75
Homo sapiens
Biosample type
303
tissue
122
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
20
connective tissue
16
liver
13
epithelium
10
pancreas
4
embryo
Project
75
AMP
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
64
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
11
inconsistent control read length
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
definitive endodermal cell
2
primitive gut cell
2
Posterior foregut
1
endocrine cell
1
posterior foregut
1
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
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