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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
37
August, 2017
21
May, 2021
16
December, 2017
16
February, 2018
14
August, 2021
Available data
79
bam
78
bed narrowPeak
78
bigWig
65
fastq
26
tagAlign
12
bigBed narrowPeak
bed bed3+
Organism
104
Homo sapiens
Biosample type
581
tissue
234
primary cell
104
in vitro differentiated cells
38
cell line
Organ
37
connective tissue
15
epithelium
12
liver
10
embryo
1
pancreas
Project
104
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
84
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
8
Hepatic endoderm
2
definitive endodermal cell
2
endocrine cell
2
posterior foregut
2
primitive gut cell
2
pancreatic PP cell
1
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