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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
87
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
65
histone
65
histone modification
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
42
August, 2017
31
February, 2018
30
December, 2017
4
January, 2018
1
August, 2018
Available data
250
bam
219
bigWig
131
tsv
108
fastq
92
bed narrowPeak
28
tagAlign
21
bed bed3+
12
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
108
Homo sapiens
Biosample type
419
cell line
369
primary cell
349
tissue
108
in vitro differentiated cells
3
stem cell
Organ
43
connective tissue
19
embryo
12
epithelium
10
liver
1
adipose tissue
Project
108
AMP
Genome assembly (visualization)
86
GRCh38
86
hg19
4
hg18
Lab
108
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
41
1
pancreatic endoderm
12
4
1
hepatocyte
10
definitive endodermal cell
6
2
1
primitive gut cell
6
2
1
Posterior foregut
4
1
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
Hepatic endoderm
2
islet precursor cell
1
white fat cell
1
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