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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
10
ATAC-seq
5
total RNA-seq
2
Capture-C
Assay category
32
DNA binding
10
DNA accessibility
5
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
RNA binding protein
5
control
Date released
42
May, 2021
4
August, 2021
3
February, 2023
Available data
10
bigWig
4
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
Organism
49
Homo sapiens
Biosample type
564
primary cell
312
tissue
49
in vitro differentiated cells
46
cell line
2
stem cell
Organ
4
connective tissue
Project
49
AMP
Genome assembly (visualization)
12
hg19
Lab
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
in vitro differentiated cells
embryonic stem cell
32
6
5
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
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