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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
August, 2017
13
December, 2017
11
May, 2021
8
February, 2018
7
August, 2021
Available data
29
bam
28
bed narrowPeak
28
bigWig
21
fastq
8
tagAlign
5
bigBed narrowPeak
4
bed bed3+
Organism
39
Homo sapiens
Biosample type
259
tissue
93
primary cell
39
in vitro differentiated cells
19
cell line
1
stem cell
Organ
8
embryo
8
epithelium
5
liver
1
pancreas
Project
39
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
29
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
August, 2017
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
Posterior foregut
1
endocrine cell
1
pancreatic PP cell
1
posterior foregut
1
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