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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
24
total RNA-seq
8
ATAC-seq
2
Hi-C
1
DNase-seq
Assay category
67
DNA binding
24
Transcription
9
DNA accessibility
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
80
bam
74
bigWig
54
fastq
45
bed narrowPeak
24
tsv
14
tagAlign
7
bed bed3+
4
bed bedgraph
3
bigBed narrowPeak
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
102
Homo sapiens
Biosample type
1071
tissue
141
primary cell
126
cell line
102
in vitro differentiated cells
Organ
78
connective tissue
Project
102
AMP
Genome assembly (visualization)
83
hg19
75
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
24
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
4
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
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