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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
4
pCHi-C
2
Hi-C
total RNA-seq
1
DNase-seq
Assay category
67
DNA binding
2
3D chromatin structure
1
DNA accessibility
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
16
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
54
bam
54
fastq
48
bigWig
43
bed narrowPeak
14
tagAlign
7
bed bed3+
4
bedpe bed3+
2
hic
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
74
Homo sapiens
Biosample type
226
tissue
74
in vitro differentiated cells
60
primary cell
7
cell line
4
stem cell
Organ
68
connective tissue
Project
74
AMP
Genome assembly (visualization)
53
hg19
49
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
pCHi-C
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
1
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
embryonic stem cell
1
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