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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
12
ATAC-seq
7
total RNA-seq
2
Capture-C
Assay category
64
DNA binding
12
DNA accessibility
7
Transcription
Target of assay
38
histone
38
histone modification
20
narrow histone mark
18
broad histone mark
15
control
11
transcription factor
2
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
80
bam
59
bed narrowPeak
56
bigWig
43
fastq
20
tagAlign
14
bed bed3+
14
bigBed narrowPeak
7
tsv
Organism
85
Homo sapiens
Biosample type
277
tissue
85
in vitro differentiated cells
44
cell line
4
primary cell
3
stem cell
Organ
19
epithelium
15
liver
13
embryo
4
connective tissue
Project
85
AMP
Genome assembly (visualization)
71
hg19
68
GRCh38
Lab
81
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
in vitro differentiated cells
neural progenitor cell
21
10
7
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
adipocyte
1
1
osteoblast
1
1
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