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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
4
pCHi-C
2
Hi-C
2
total RNA-seq
Assay category
43
DNA binding
2
3D chromatin structure
2
Transcription
Target of assay
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
11
transcription factor
8
control
2
RNA binding protein
1
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
45
bam
43
fastq
36
bigWig
34
bed narrowPeak
14
bigBed narrowPeak
12
bed bed3+
4
bedpe bed3+
4
tsv
2
hic
2
ibed
Organism
51
Homo sapiens
Biosample type
88
tissue
51
in vitro differentiated cells
11
cell line
7
stem cell
1
primary cell
Organ
19
epithelium
15
liver
13
embryo
Project
51
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
pCHi-C
Hi-C
total RNA-seq
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
Hepatic endoderm
4
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
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